(SPHK1) sphingosine kinase 1 [Homo sapiens] |
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Gene
Transcript(s)
Exon(s)
Protein(s)
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Accession
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8845
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Official symbol
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SPHK1
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Official name
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sphingosine kinase 1
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Gene type
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gene with protein product
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Organism
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Homo sapiens
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Location
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Chromosome 17 (NC_000017.10) : 74380689...74383940 (+)
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Map
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17q25.2
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Length
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3252 nt
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NM_021972.3
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SPHK1, mRNA isoform 1
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NM_182965.2
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SPHK1, mRNA isoform 2
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NM_001142601.1
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SPHK1, mRNA isoform 3
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NM_001142602.1
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SPHK1, mRNA isoform 4
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Accession
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Name
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Organism
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Length
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Q9NYA1
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Sphingosine kinase 1
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Homo sapiens
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384 aa
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Q96GK1
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Sphingosine kinase 1 [submitted name]
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Homo sapiens
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398 aa
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Q53ZR5
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Sphingosine kinase 1 [submitted name]
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Homo sapiens
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384 aa
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Summary |
Sphingosine-1-phosphate (SPP) is a novel lipid messenger with both intracellular and extracellular functions. Intracellularly, it regulates proliferation and survival, and extracellularly, it is a ligand for EDG1 (MIM 601974). Various stimuli increase cellular levels of SPP by activation of sphingosine kinase (SPHK), the enzyme that catalyzes the phosphorylation of sphingosine. Competitive inhibitors of SPHK block formation of SPP and selectively inhibit cellular proliferation induced by a variety of factors, including platelet-derived growth factor (e.g., MIM 173430) and serum.[supplied by OMIM].
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Related Articles in PubMed
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Go to ensembl
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1 |
CAGTGCCCTC |
CCCGCTCCGC |
GGCGCCGGCT |
GCGAAGTTGA |
GCGAAAAGTT |
TGAGGCCGGA |
GGGAGCGAGG |
CCGGGGAGTC |
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81 |
CGCTCCAGCG |
GGGCGCTCCA |
GTCCCTCAGA |
CGTGGGCTGA |
GCTTGGGACG |
AGCTGCGTTC |
CGCCCCAGGC |
CACTGTAGGG |
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161 |
AACGGCGGTG |
GCGCCTCCCC |
AGCAAACCGG |
ACCGACTGGG |
TAGGGCCGCC |
CACCCTGCCT |
TCGCGCCGCT |
CGTGGCTCCT |
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241 |
GTGCGGCCCG |
CCCTCGCGGG |
GCCCCGGGAA |
CTGGGCCACT |
TGTCGCTTGG |
GCGAGAGCAG |
GCGGCAGCTG |
GTGGCCCGGT |
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321 |
TCGGGCTTGG |
CTTTGGCGCG |
ACCCGGGAGC |
GGCTCCCACG |
AGCGCCGCGC |
GCGTCGCAAC |
GGAGCGGGGC |
CCTGAGAAGC |
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401 |
GCGCGCCGCG |
GCTCCCACCG |
CTCTGGAGCT |
CCGGGCAGGG |
GACACGGCAA |
CCTGGATGGC |
TGGGGCAGGG |
ATCCTCTCCC |
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481 |
AGAACTTCGT |
GCCCAGCAAT |
GTCCGCTCAA |
GTTCTGGGAT |
TTTTACGCAG |
CTGGACTCCC |
CTCCCCCTGG |
CAGCCCCGAG |
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561 |
GGGTGAGGAG |
CTAGTCCGTC |
GGAGGGAGCC |
ACGGGGCTCT |
GACTCATCCG |
TCGGGCCGGA |
ACCGAACCCC |
AAGCCCCAGG |
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641 |
GAGAAAGCCC |
CGGAGCAGGC |
GCCCTTCTCA |
GGGATTGTAG |
GCTTAGTCAC |
ACGGCGGGGG |
CGCCCTCGGA |
GGCACCGGAC |
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721 |
CTCAGCTCTC |
TGGACTTCCC |
GGGAACCTGG |
CTCCCCGCGC |
GTGGTCCCGG |
GATTTAGTCG |
GGCGCTCCCC |
ACCTCTGGCA |
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801 |
GCTGCGGCCC |
CGGACTCCGC |
CAGCGCTGTC |
TTCTCTCCCT |
CAGGTCCAGC |
CGCCGCAGGG |
AATGACGCCG |
GTGCTCCTGC |
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881 |
AGCCACGGCT |
CCGGGCGGGG |
AAGGCGAGCC |
CCACAGCCGG |
CCCTGCGACG |
CCCGCCTGGG |
CAGCACCGAT |
AAGGAGCTGA |
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961 |
AGGCAGGAGC |
CGCCGCCACG |
GGCAGCGCCC |
CCACAGCGCC |
AGGGACCCCC |
TGGCAGCGGG |
AGCCGCGGGT |
CGAGGTTATG |
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1041 |
GATCCAGGTT |
TGTGGGGTTC |
CTGCTGGGAA |
GGGCTGTAGG |
GGGATTCCTG |
TTCCTCGCCA |
GGAATGATGG |
AACGCCCAGC |
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1121 |
TGGACGAAAG |
GGGCTGTGGA |
CGATCGGGAG |
AAACATTATC |
CCTCACGAGG |
CCAGAAGCCG |
GCCGAATCTG |
AGCCAAGGAA |
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1201 |
GGGGGTGGCA |
GGGGCGCCGC |
GTCCCCACCC |
CAGGTCTCCC |
AGCAAAGGCC |
GCTCCTCTGG |
CCAGGGTCAA |
TTACCGGGGT |
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1281 |
GTTTCGGGCA |
CCAAGTTCCC |
ACACTAGTGC |
CCCATTGTTA |
CCCGTGGCCC |
CCTAGTGGTC |
GGTTGCGGAC |
GTGGCCTCTT |
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1361 |
TGGTTTTGTT |
TTCTCAGCGG |
GCGGCCCCCG |
GGGCGTGCTC |
CCGCGGCCCT |
GCCGCGTGCT |
GGTGCTGCTG |
AACCCGCGCG |
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1441 |
GCGGCAAGGG |
CAAGGCCTTG |
CAGCTCTTCC |
GGAGTCACGT |
GCAGCCCCTT |
TTGGCTGAGG |
CTGAAATCTC |
CTTCACGCTG |
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1521 |
ATGCTCACTG |
GTGAGTACCT |
CTCGGAGGGG |
GTTTCGGGAG |
CATCCCCTGG |
CAGGGGACCC |
CCCCAGTCCT |
GATAGCTGCC |
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1601 |
GGTCTCCCTG |
CAGAGCGGCG |
GAACCACGCG |
CGGGAGCTGG |
TGCGGTCGGA |
GGAGCTGGGC |
CGCTGGGACG |
CTCTGGTGGT |
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1681 |
CATGTCTGGA |
GACGGGCTGA |
TGCACGAGGT |
GAGGACCGCA |
CTGCGCGGCT |
AGGCCTGGGG |
CTTGGCGCGG |
TGCGTCCCAG |
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1761 |
GCTGAGGCCA |
CGTGTGCTTC |
AACAGGTGGT |
GAACGGGCTC |
ATGGAGCGGC |
CTGACTGGGA |
GACCGCCATC |
CAGAAGCCCC |
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1841 |
TGTGTAGCCT |
CCCAGCAGGC |
TCTGGCAACG |
CGCTGGCAGC |
TTCCTTGAAC |
CATTATGCTG |
GGTGAGAGCC |
CAGGGCCAGA |
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1921 |
GTAGGCCTGT |
TTCCCGTCAG |
TGCTCCTCTA |
CCGCGGGGGT |
TTTCTTGTCT |
AAGCTCCCAT |
AGGCTGAGAT |
CATTTCCATT |
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2001 |
TCCCCTTCTC |
CCTTAGTCCT |
GGGGCCCTCT |
CCTGGTGACC |
CCAGCTGACT |
GCTTCCATTT |
GCTCCATCTG |
TCACCTACCA |
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2081 |
GTCCTGCCAA |
CTCCCCAGGG |
ACCACATGGC |
GCTTTGCCAG |
CTCCCACTCC |
CCGGGAGGAG |
GAAGCGGGGG |
ATACATGGGG |
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2161 |
GCTCCTGTCC |
TGCCTTATCT |
GACTTTTTCC |
CCCTGCAGCT |
ATGAGCAGGT |
CACCAATGAA |
GACCTCCTGA |
CCAACTGCAC |
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2241 |
GCTATTGCTG |
TGCCGCCGGC |
TGCTGTCACC |
CATGAACCTG |
CTGTCTCTGC |
ACACGGCTTC |
GGGGCTGCGC |
CTCTTCTCTG |
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2321 |
TGCTCAGCCT |
GGCCTGGGGC |
TTCATTGCTG |
ATGTGGACCT |
AGAGAGTGAG |
AAGTATCGGC |
GTCTGGGGGA |
GATGCGCTTC |
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2401 |
ACTCTGGGCA |
CCTTCCTGCG |
TCTGGCAGCC |
CTGCGCACCT |
ACCGCGGCCG |
ACTGGCCTAC |
CTCCCTGTAG |
GAAGAGTGGG |
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2481 |
TTCCAAGACA |
CCTGCCTCCC |
CCGTTGTGGT |
CCAGCAGGGC |
CCGGTAGATG |
CACACCTTGT |
GCCACTGGAG |
GAGCCAGTGC |
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2561 |
CCTCTCACTG |
GACAGTGGTG |
CCCGACGAGG |
ACTTTGTGCT |
AGTCCTGGCA |
CTGCTGCACT |
CGCACCTGGG |
CAGTGAGATG |
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2641 |
TTTGCTGCAC |
CCATGGGCCG |
CTGTGCAGCT |
GGCGTCATGC |
ATCTGTTCTA |
CGTGCGGGCG |
GGAGTGTCTC |
GTGCCATGCT |
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2721 |
GCTGCGCCTC |
TTCCTGGCCA |
TGGAGAAGGG |
CAGGCATATG |
GAGTATGAAT |
GCCCCTACTT |
GGTATATGTG |
CCCGTGGTCG |
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2801 |
CCTTCCGCTT |
GGAGCCCAAG |
GATGGGAAAG |
GTGTGTTTGC |
AGTGGATGGG |
GAATTGATGG |
TTAGCGAGGC |
CGTGCAGGGC |
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2881 |
CAGGTGCACC |
CAAACTACTT |
CTGGATGGTC |
AGCGGTTGCG |
TGGAGCCCCC |
GCCCAGCTGG |
AAGCCCCAGC |
AGATGCCACC |
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2961 |
GCCAGAAGAG |
CCCTTATGAC |
CCCTGGGCCG |
CGCTGTGCCT |
TAGTGTCTAC |
TTGCAGGACC |
CTTCCTCCTT |
CCCTAGGGCT |
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3041 |
GCAGGGCCTG |
TCCACAGCTC |
CTGTGGGGGT |
GGAGGAGACT |
CCTCTGGAGA |
AGGGTGAGAA |
GGTGGAGGCT |
ATGCTTTGGG |
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3121 |
GGGACAGGCC |
AGAATGAAGT |
CCTGGGTCAG |
GAGCCCAGCT |
GGCTGGGCCC |
AGCTGCCTAT |
GTAAGGCCTT |
CTAGTTTGTT |
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3201 |
CTGAGACCCC |
CACCCCACGA |
ACCAAATCCA |
AATAAAGTGA |
CATTCCCAGC |
CT |
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>ref|Gene_ID:8877|SPHK1|NC_000017.10:74380689...74383940 (+)
CAGTGCCCTCCCCGCTCCGCGGCGCCGGCTGCGAAGTTGAGCGAAAAGTTTGAGGCCGGAGGGAGCGAGGCCGGGGAGTC
CGCTCCAGCGGGGCGCTCCAGTCCCTCAGACGTGGGCTGAGCTTGGGACGAGCTGCGTTCCGCCCCAGGCCACTGTAGGG
AACGGCGGTGGCGCCTCCCCAGCAAACCGGACCGACTGGGTAGGGCCGCCCACCCTGCCTTCGCGCCGCTCGTGGCTCCT
GTGCGGCCCGCCCTCGCGGGGCCCCGGGAACTGGGCCACTTGTCGCTTGGGCGAGAGCAGGCGGCAGCTGGTGGCCCGGT
TCGGGCTTGGCTTTGGCGCGACCCGGGAGCGGCTCCCACGAGCGCCGCGCGCGTCGCAACGGAGCGGGGCCCTGAGAAGC
GCGCGCCGCGGCTCCCACCGCTCTGGAGCTCCGGGCAGGGGACACGGCAACCTGGATGGCTGGGGCAGGGATCCTCTCCC
AGAACTTCGTGCCCAGCAATGTCCGCTCAAGTTCTGGGATTTTTACGCAGCTGGACTCCCCTCCCCCTGGCAGCCCCGAG
GGGTGAGGAGCTAGTCCGTCGGAGGGAGCCACGGGGCTCTGACTCATCCGTCGGGCCGGAACCGAACCCCAAGCCCCAGG
GAGAAAGCCCCGGAGCAGGCGCCCTTCTCAGGGATTGTAGGCTTAGTCACACGGCGGGGGCGCCCTCGGAGGCACCGGAC
CTCAGCTCTCTGGACTTCCCGGGAACCTGGCTCCCCGCGCGTGGTCCCGGGATTTAGTCGGGCGCTCCCCACCTCTGGCA
GCTGCGGCCCCGGACTCCGCCAGCGCTGTCTTCTCTCCCTCAGGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGC
AGCCACGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGGCCCTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGA
AGGCAGGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCCAGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATG
GATCCAGGTTTGTGGGGTTCCTGCTGGGAAGGGCTGTAGGGGGATTCCTGTTCCTCGCCAGGAATGATGGAACGCCCAGC
TGGACGAAAGGGGCTGTGGACGATCGGGAGAAACATTATCCCTCACGAGGCCAGAAGCCGGCCGAATCTGAGCCAAGGAA
GGGGGTGGCAGGGGCGCCGCGTCCCCACCCCAGGTCTCCCAGCAAAGGCCGCTCCTCTGGCCAGGGTCAATTACCGGGGT
GTTTCGGGCACCAAGTTCCCACACTAGTGCCCCATTGTTACCCGTGGCCCCCTAGTGGTCGGTTGCGGACGTGGCCTCTT
TGGTTTTGTTTTCTCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGCCGCGTGCTGGTGCTGCTGAACCCGCGCG
GCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTTGGCTGAGGCTGAAATCTCCTTCACGCTG
ATGCTCACTGGTGAGTACCTCTCGGAGGGGGTTTCGGGAGCATCCCCTGGCAGGGGACCCCCCCAGTCCTGATAGCTGCC
GGTCTCCCTGCAGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGAGCTGGGCCGCTGGGACGCTCTGGTGGT
CATGTCTGGAGACGGGCTGATGCACGAGGTGAGGACCGCACTGCGCGGCTAGGCCTGGGGCTTGGCGCGGTGCGTCCCAG
GCTGAGGCCACGTGTGCTTCAACAGGTGGTGAACGGGCTCATGGAGCGGCCTGACTGGGAGACCGCCATCCAGAAGCCCC
TGTGTAGCCTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAACCATTATGCTGGGTGAGAGCCCAGGGCCAGA
GTAGGCCTGTTTCCCGTCAGTGCTCCTCTACCGCGGGGGTTTTCTTGTCTAAGCTCCCATAGGCTGAGATCATTTCCATT
TCCCCTTCTCCCTTAGTCCTGGGGCCCTCTCCTGGTGACCCCAGCTGACTGCTTCCATTTGCTCCATCTGTCACCTACCA
GTCCTGCCAACTCCCCAGGGACCACATGGCGCTTTGCCAGCTCCCACTCCCCGGGAGGAGGAAGCGGGGGATACATGGGG
GCTCCTGTCCTGCCTTATCTGACTTTTTCCCCCTGCAGCTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCAC
GCTATTGCTGTGCCGCCGGCTGCTGTCACCCATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCTTCTCTG
TGCTCAGCCTGGCCTGGGGCTTCATTGCTGATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGATGCGCTTC
ACTCTGGGCACCTTCCTGCGTCTGGCAGCCCTGCGCACCTACCGCGGCCGACTGGCCTACCTCCCTGTAGGAAGAGTGGG
TTCCAAGACACCTGCCTCCCCCGTTGTGGTCCAGCAGGGCCCGGTAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGC
CCTCTCACTGGACAGTGGTGCCCGACGAGGACTTTGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATG
TTTGCTGCACCCATGGGCCGCTGTGCAGCTGGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCT
GCTGCGCCTCTTCCTGGCCATGGAGAAGGGCAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCG
CCTTCCGCTTGGAGCCCAAGGATGGGAAAGGTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTGCAGGGC
CAGGTGCACCCAAACTACTTCTGGATGGTCAGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGATGCCACC
GCCAGAAGAGCCCTTATGACCCCTGGGCCGCGCTGTGCCTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCCCTAGGGCT
GCAGGGCCTGTCCACAGCTCCTGTGGGGGTGGAGGAGACTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTATGCTTTGGG
GGGACAGGCCAGAATGAAGTCCTGGGTCAGGAGCCCAGCTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCTAGTTTGTT
CTGAGACCCCCACCCCACGAACCAAATCCAAATAAAGTGACATTCCCAGCCT
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Primary source |
RefSeq : NM_021972.3 (GI:217330654)
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Name |
Sphingosine kinase 1 (SPHK1), transcript variant 1
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Type of transcript |
mRNA
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Organism |
Homo sapiens
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Length |
1881 nt
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Map |
17q25.2
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Location |
Chromosome 17 (NC_000017.10) strand : +
74380689...74380886 | 74381531...74381734 | 74382023...74382217 | 74382301...74382395 |
74382473...74382588 | 74382886...74383940 |
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Exon(s) |
Start |
End |
Length |
is coding |
Exon 1a
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1
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198
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198
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1
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Exon 2b
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199
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402
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204
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1
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Exon 3a
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403
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597
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195
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1
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Exon 4
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598
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692
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95
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1
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Exon 5
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693
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808
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116
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1
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Exon 6
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809
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1863
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1055
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1
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Primary source |
NCBI :
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Nucleotide |
SPHK1, mRNA isoform 1[NM_021972.3] : 393...1589
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Length |
1197
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Location |
Chromosome 17 (NC_000017.10) strand : +
74381725...74381734 | 74382023...74382217 | 74382301...74382395 | 74382473...74382588 |
74382886...74383666 |
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Start codon |
1
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Translation |
NP_068807.2 |
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1 |
AGTGCCCTCC |
CCGCTCCGCG |
GCGCCGGCTG |
CGAAGTTGAG |
CGAAAAGTTT |
GAGGCCGGAG |
GGAGCGAGGC |
CGGGGAGTCC |
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81 |
GCTCCAGCGG |
GGCGCTCCAG |
TCCCTCAGAC |
GTGGGCTGAG |
CTTGGGACGA |
GCTGCGTTCC |
GCCCCAGGCC |
ACTGTAGGGA |
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161 |
ACGGCGGTGG |
CGCCTCCCCA |
GCAAACCGGA |
CCGACTGGGT |
CCAGCCGCCG |
CAGGGAATGA |
CGCCGGTGCT |
CCTGCAGCCA |
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241 |
CGGCTCCGGG |
CGGGGAAGGC |
GAGCCCCACA |
GCCGGCCCTG |
CGACGCCCGC |
CTGGGCAGCA |
CCGATAAGGA |
GCTGAAGGCA |
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321 |
GGAGCCGCCG |
CCACGGGCAG |
CGCCCCCACA |
GCGCCAGGGA |
CCCCCTGGCA |
GCGGGAGCCG |
CGGGTCGAGG |
TTATGGATCC |
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401 |
AGTGGTCGGT |
TGCGGACGTG |
GCCTCTTTGG |
TTTTGTTTTC |
TCAGCGGGCG |
GCCCCCGGGG |
CGTGCTCCCG |
CGGCCCTGCC |
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481 |
GCGTGCTGGT |
GCTGCTGAAC |
CCGCGCGGCG |
GCAAGGGCAA |
GGCCTTGCAG |
CTCTTCCGGA |
GTCACGTGCA |
GCCCCTTTTG |
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561 |
GCTGAGGCTG |
AAATCTCCTT |
CACGCTGATG |
CTCACTGAGC |
GGCGGAACCA |
CGCGCGGGAG |
CTGGTGCGGT |
CGGAGGAGCT |
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641 |
GGGCCGCTGG |
GACGCTCTGG |
TGGTCATGTC |
TGGAGACGGG |
CTGATGCACG |
AGGTGGTGAA |
CGGGCTCATG |
GAGCGGCCTG |
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721 |
ACTGGGAGAC |
CGCCATCCAG |
AAGCCCCTGT |
GTAGCCTCCC |
AGCAGGCTCT |
GGCAACGCGC |
TGGCAGCTTC |
CTTGAACCAT |
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801 |
TATGCTGGCT |
ATGAGCAGGT |
CACCAATGAA |
GACCTCCTGA |
CCAACTGCAC |
GCTATTGCTG |
TGCCGCCGGC |
TGCTGTCACC |
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881 |
CATGAACCTG |
CTGTCTCTGC |
ACACGGCTTC |
GGGGCTGCGC |
CTCTTCTCTG |
TGCTCAGCCT |
GGCCTGGGGC |
TTCATTGCTG |
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961 |
ATGTGGACCT |
AGAGAGTGAG |
AAGTATCGGC |
GTCTGGGGGA |
GATGCGCTTC |
ACTCTGGGCA |
CCTTCCTGCG |
TCTGGCAGCC |
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1041 |
CTGCGCACCT |
ACCGCGGCCG |
ACTGGCCTAC |
CTCCCTGTAG |
GAAGAGTGGG |
TTCCAAGACA |
CCTGCCTCCC |
CCGTTGTGGT |
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1121 |
CCAGCAGGGC |
CCGGTAGATG |
CACACCTTGT |
GCCACTGGAG |
GAGCCAGTGC |
CCTCTCACTG |
GACAGTGGTG |
CCCGACGAGG |
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1201 |
ACTTTGTGCT |
AGTCCTGGCA |
CTGCTGCACT |
CGCACCTGGG |
CAGTGAGATG |
TTTGCTGCAC |
CCATGGGCCG |
CTGTGCAGCT |
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1281 |
GGCGTCATGC |
ATCTGTTCTA |
CGTGCGGGCG |
GGAGTGTCTC |
GTGCCATGCT |
GCTGCGCCTC |
TTCCTGGCCA |
TGGAGAAGGG |
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1361 |
CAGGCATATG |
GAGTATGAAT |
GCCCCTACTT |
GGTATATGTG |
CCCGTGGTCG |
CCTTCCGCTT |
GGAGCCCAAG |
GATGGGAAAG |
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1441 |
GTGTGTTTGC |
AGTGGATGGG |
GAATTGATGG |
TTAGCGAGGC |
CGTGCAGGGC |
CAGGTGCACC |
CAAACTACTT |
CTGGATGGTC |
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1521 |
AGCGGTTGCG |
TGGAGCCCCC |
GCCCAGCTGG |
AAGCCCCAGC |
AGATGCCACC |
GCCAGAAGAG |
CCCTTATGAC |
CCCTGGGCCG |
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1601 |
CGCTGTGCCT |
TAGTGTCTAC |
TTGCAGGACC |
CTTCCTCCTT |
CCCTAGGGCT |
GCAGGGCCTG |
TCCACAGCTC |
CTGTGGGGGT |
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1681 |
GGAGGAGACT |
CCTCTGGAGA |
AGGGTGAGAA |
GGTGGAGGCT |
ATGCTTTGGG |
GGGACAGGCC |
AGAATGAAGT |
CCTGGGTCAG |
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1761 |
GAGCCCAGCT |
GGCTGGGCCC |
AGCTGCCTAT |
GTAAGGCCTT |
CTAGTTTGTT |
CTGAGACCCC |
CACCCCACGA |
ACCAAATCCA |
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1841 |
AATAAAGTGA |
CATTCCCAGC |
CTGAAAAAAA |
AAAAAAAAAA |
A |
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>gi|217330654|ref|NM_021972.3|Sphingosine kinase 1 (SPHK1), transcript variant 1
AGTGCCCTCCCCGCTCCGCGGCGCCGGCTGCGAAGTTGAGCGAAAAGTTTGAGGCCGGAGGGAGCGAGGCCGGGGAGTCC
GCTCCAGCGGGGCGCTCCAGTCCCTCAGACGTGGGCTGAGCTTGGGACGAGCTGCGTTCCGCCCCAGGCCACTGTAGGGA
ACGGCGGTGGCGCCTCCCCAGCAAACCGGACCGACTGGGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGCAGCCA
CGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGGCCCTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGAAGGCA
GGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCCAGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCC
AGTGGTCGGTTGCGGACGTGGCCTCTTTGGTTTTGTTTTCTCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGCC
GCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTTG
GCTGAGGCTGAAATCTCCTTCACGCTGATGCTCACTGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGAGCT
GGGCCGCTGGGACGCTCTGGTGGTCATGTCTGGAGACGGGCTGATGCACGAGGTGGTGAACGGGCTCATGGAGCGGCCTG
ACTGGGAGACCGCCATCCAGAAGCCCCTGTGTAGCCTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAACCAT
TATGCTGGCTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCACGCTATTGCTGTGCCGCCGGCTGCTGTCACC
CATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCTTCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTGCTG
ATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGATGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCAGCC
CTGCGCACCTACCGCGGCCGACTGGCCTACCTCCCTGTAGGAAGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGTGGT
CCAGCAGGGCCCGGTAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACGAGG
ACTTTGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATGTTTGCTGCACCCATGGGCCGCTGTGCAGCT
GGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCTGCTGCGCCTCTTCCTGGCCATGGAGAAGGG
CAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCGCCTTCCGCTTGGAGCCCAAGGATGGGAAAG
GTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTGCAGGGCCAGGTGCACCCAAACTACTTCTGGATGGTC
AGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGATGCCACCGCCAGAAGAGCCCTTATGACCCCTGGGCCG
CGCTGTGCCTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCCCTAGGGCTGCAGGGCCTGTCCACAGCTCCTGTGGGGGT
GGAGGAGACTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTATGCTTTGGGGGGACAGGCCAGAATGAAGTCCTGGGTCAG
GAGCCCAGCTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCTAGTTTGTTCTGAGACCCCCACCCCACGAACCAAATCCA
AATAAAGTGACATTCCCAGCCTGAAAAAAAAAAAAAAAAAA
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Primary source |
RefSeq : NM_182965.2 (GI:217272879)
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Name |
Sphingosine kinase 1 (SPHK1), transcript variant 2
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Type of transcript |
mRNA
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Organism |
Homo sapiens
|
Length |
2202 nt
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Map |
17q25.2
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Location |
Chromosome 17 (NC_000017.10) strand : +
74380689...74381249 | 74381531...74381734 | 74382065...74382217 | 74382301...74382395 |
74382473...74382588 | 74382886...74383940 |
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Exon(s) |
Start |
End |
Length |
is coding |
Exon 1b
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1
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561
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561
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1
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Exon 2b
|
562
|
765
|
204
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1
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Exon 3b
|
766
|
918
|
153
|
1
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Exon 4
|
919
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1013
|
95
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1
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Exon 5
|
1014
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1129
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116
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1
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Exon 6
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1130
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2184
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1055
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1
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ID |
Class |
Location |
Mutation |
Length |
is synonymous |
Source |
rs34860951
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insertion
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559
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-/g
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1
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?
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dbSNP
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Primary source |
NCBI : CCDS11744
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Nucleotide |
SPHK1, mRNA isoform 2[NM_182965.2] : 498...1910
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Length |
1413
|
Location |
Chromosome 17 (NC_000017.10) strand : +
74381186...74381249 | 74381531...74381734 | 74382065...74382217 | 74382301...74382395 |
74382473...74382588 | 74382886...74383666 |
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Start codon |
1
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Translation |
NP_892010.2 |
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1 |
AGTGCCCTCC |
CCGCTCCGCG |
GCGCCGGCTG |
CGAAGTTGAG |
CGAAAAGTTT |
GAGGCCGGAG |
GGAGCGAGGC |
CGGGGAGTCC |
|
81 |
GCTCCAGCGG |
GGCGCTCCAG |
TCCCTCAGAC |
GTGGGCTGAG |
CTTGGGACGA |
GCTGCGTTCC |
GCCCCAGGCC |
ACTGTAGGGA |
|
161 |
ACGGCGGTGG |
CGCCTCCCCA |
GCAAACCGGA |
CCGACTGGGT |
AGGGCCGCCC |
ACCCTGCCTT |
CGCGCCGCTC |
GTGGCTCCTG |
|
241 |
TGCGGCCCGC |
CCTCGCGGGG |
CCCCGGGAAC |
TGGGCCACTT |
GTCGCTTGGG |
CGAGAGCAGG |
CGGCAGCTGG |
TGGCCCGGTT |
|
321 |
CGGGCTTGGC |
TTTGGCGCGA |
CCCGGGAGCG |
GCTCCCACGA |
GCGCCGCGCG |
CGTCGCAACG |
GAGCGGGGCC |
CTGAGAAGCG |
|
401 |
CGCGCCGCGG |
CTCCCACCGC |
TCTGGAGCTC |
CGGGCAGGGG |
ACACGGCAAC |
CTGGATGGCT |
GGGGCAGGGA |
TCCTCTCCCA |
|
481 |
GAACTTCGTG |
CCCAGCAATG |
TCCGCTCAAG |
TTCTGGGATT |
TTTACGCAGC |
TGGACTCCCC |
TCCCCCTGGC |
AGCCCCGAGG |
|
561 |
GGTCCAGCCG |
CCGCAGGGAA |
TGACGCCGGT |
GCTCCTGCAG |
CCACGGCTCC |
GGGCGGGGAA |
GGCGAGCCCC |
ACAGCCGGCC |
|
641 |
CTGCGACGCC |
CGCCTGGGCA |
GCACCGATAA |
GGAGCTGAAG |
GCAGGAGCCG |
CCGCCACGGG |
CAGCGCCCCC |
ACAGCGCCAG |
|
721 |
GGACCCCCTG |
GCAGCGGGAG |
CCGCGGGTCG |
AGGTTATGGA |
TCCAGCGGGC |
GGCCCCCGGG |
GCGTGCTCCC |
GCGGCCCTGC |
|
801 |
CGCGTGCTGG |
TGCTGCTGAA |
CCCGCGCGGC |
GGCAAGGGCA |
AGGCCTTGCA |
GCTCTTCCGG |
AGTCACGTGC |
AGCCCCTTTT |
|
881 |
GGCTGAGGCT |
GAAATCTCCT |
TCACGCTGAT |
GCTCACTGAG |
CGGCGGAACC |
ACGCGCGGGA |
GCTGGTGCGG |
TCGGAGGAGC |
|
961 |
TGGGCCGCTG |
GGACGCTCTG |
GTGGTCATGT |
CTGGAGACGG |
GCTGATGCAC |
GAGGTGGTGA |
ACGGGCTCAT |
GGAGCGGCCT |
|
1041 |
GACTGGGAGA |
CCGCCATCCA |
GAAGCCCCTG |
TGTAGCCTCC |
CAGCAGGCTC |
TGGCAACGCG |
CTGGCAGCTT |
CCTTGAACCA |
|
1121 |
TTATGCTGGC |
TATGAGCAGG |
TCACCAATGA |
AGACCTCCTG |
ACCAACTGCA |
CGCTATTGCT |
GTGCCGCCGG |
CTGCTGTCAC |
|
1201 |
CCATGAACCT |
GCTGTCTCTG |
CACACGGCTT |
CGGGGCTGCG |
CCTCTTCTCT |
GTGCTCAGCC |
TGGCCTGGGG |
CTTCATTGCT |
|
1281 |
GATGTGGACC |
TAGAGAGTGA |
GAAGTATCGG |
CGTCTGGGGG |
AGATGCGCTT |
CACTCTGGGC |
ACCTTCCTGC |
GTCTGGCAGC |
|
1361 |
CCTGCGCACC |
TACCGCGGCC |
GACTGGCCTA |
CCTCCCTGTA |
GGAAGAGTGG |
GTTCCAAGAC |
ACCTGCCTCC |
CCCGTTGTGG |
|
1441 |
TCCAGCAGGG |
CCCGGTAGAT |
GCACACCTTG |
TGCCACTGGA |
GGAGCCAGTG |
CCCTCTCACT |
GGACAGTGGT |
GCCCGACGAG |
|
1521 |
GACTTTGTGC |
TAGTCCTGGC |
ACTGCTGCAC |
TCGCACCTGG |
GCAGTGAGAT |
GTTTGCTGCA |
CCCATGGGCC |
GCTGTGCAGC |
|
1601 |
TGGCGTCATG |
CATCTGTTCT |
ACGTGCGGGC |
GGGAGTGTCT |
CGTGCCATGC |
TGCTGCGCCT |
CTTCCTGGCC |
ATGGAGAAGG |
|
1681 |
GCAGGCATAT |
GGAGTATGAA |
TGCCCCTACT |
TGGTATATGT |
GCCCGTGGTC |
GCCTTCCGCT |
TGGAGCCCAA |
GGATGGGAAA |
|
1761 |
GGTGTGTTTG |
CAGTGGATGG |
GGAATTGATG |
GTTAGCGAGG |
CCGTGCAGGG |
CCAGGTGCAC |
CCAAACTACT |
TCTGGATGGT |
|
1841 |
CAGCGGTTGC |
GTGGAGCCCC |
CGCCCAGCTG |
GAAGCCCCAG |
CAGATGCCAC |
CGCCAGAAGA |
GCCCTTATGA |
CCCCTGGGCC |
|
1921 |
GCGCTGTGCC |
TTAGTGTCTA |
CTTGCAGGAC |
CCTTCCTCCT |
TCCCTAGGGC |
TGCAGGGCCT |
GTCCACAGCT |
CCTGTGGGGG |
|
2001 |
TGGAGGAGAC |
TCCTCTGGAG |
AAGGGTGAGA |
AGGTGGAGGC |
TATGCTTTGG |
GGGGACAGGC |
CAGAATGAAG |
TCCTGGGTCA |
|
2081 |
GGAGCCCAGC |
TGGCTGGGCC |
CAGCTGCCTA |
TGTAAGGCCT |
TCTAGTTTGT |
TCTGAGACCC |
CCACCCCACG |
AACCAAATCC |
|
2161 |
AAATAAAGTG |
ACATTCCCAG |
CCTGAAAAAA |
AAAAAAAAAA |
AA |
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>gi|217272879|ref|NM_182965.2|Sphingosine kinase 1 (SPHK1), transcript variant 2
AGTGCCCTCCCCGCTCCGCGGCGCCGGCTGCGAAGTTGAGCGAAAAGTTTGAGGCCGGAGGGAGCGAGGCCGGGGAGTCC
GCTCCAGCGGGGCGCTCCAGTCCCTCAGACGTGGGCTGAGCTTGGGACGAGCTGCGTTCCGCCCCAGGCCACTGTAGGGA
ACGGCGGTGGCGCCTCCCCAGCAAACCGGACCGACTGGGTAGGGCCGCCCACCCTGCCTTCGCGCCGCTCGTGGCTCCTG
TGCGGCCCGCCCTCGCGGGGCCCCGGGAACTGGGCCACTTGTCGCTTGGGCGAGAGCAGGCGGCAGCTGGTGGCCCGGTT
CGGGCTTGGCTTTGGCGCGACCCGGGAGCGGCTCCCACGAGCGCCGCGCGCGTCGCAACGGAGCGGGGCCCTGAGAAGCG
CGCGCCGCGGCTCCCACCGCTCTGGAGCTCCGGGCAGGGGACACGGCAACCTGGATGGCTGGGGCAGGGATCCTCTCCCA
GAACTTCGTGCCCAGCAATGTCCGCTCAAGTTCTGGGATTTTTACGCAGCTGGACTCCCCTCCCCCTGGCAGCCCCGAGG
GGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGCAGCCACGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGGCC
CTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGAAGGCAGGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCCAG
GGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGC
CGCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTT
GGCTGAGGCTGAAATCTCCTTCACGCTGATGCTCACTGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGAGC
TGGGCCGCTGGGACGCTCTGGTGGTCATGTCTGGAGACGGGCTGATGCACGAGGTGGTGAACGGGCTCATGGAGCGGCCT
GACTGGGAGACCGCCATCCAGAAGCCCCTGTGTAGCCTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAACCA
TTATGCTGGCTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCACGCTATTGCTGTGCCGCCGGCTGCTGTCAC
CCATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCTTCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTGCT
GATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGATGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCAGC
CCTGCGCACCTACCGCGGCCGACTGGCCTACCTCCCTGTAGGAAGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGTGG
TCCAGCAGGGCCCGGTAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACGAG
GACTTTGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATGTTTGCTGCACCCATGGGCCGCTGTGCAGC
TGGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCTGCTGCGCCTCTTCCTGGCCATGGAGAAGG
GCAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCGCCTTCCGCTTGGAGCCCAAGGATGGGAAA
GGTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTGCAGGGCCAGGTGCACCCAAACTACTTCTGGATGGT
CAGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGATGCCACCGCCAGAAGAGCCCTTATGACCCCTGGGCC
GCGCTGTGCCTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCCCTAGGGCTGCAGGGCCTGTCCACAGCTCCTGTGGGGG
TGGAGGAGACTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTATGCTTTGGGGGGACAGGCCAGAATGAAGTCCTGGGTCA
GGAGCCCAGCTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCTAGTTTGTTCTGAGACCCCCACCCCACGAACCAAATCC
AAATAAAGTGACATTCCCAGCCTGAAAAAAAAAAAAAAAAAA
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Primary source |
RefSeq : NM_001142601.1 (GI:217272882)
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Name |
Sphingosine kinase 1 (SPHK1), transcript variant 3
|
Type of transcript |
mRNA
|
Organism |
Homo sapiens
|
Length |
1839 nt
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Map |
17q25.2
|
Location |
Chromosome 17 (NC_000017.10) strand : +
74380689...74380886 | 74381531...74381734 | 74382065...74382217 | 74382301...74382395 |
74382473...74382588 | 74382886...74383940 |
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Exon(s) |
Start |
End |
Length |
is coding |
Exon 1a
|
1
|
198
|
198
|
1
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Exon 2b
|
199
|
402
|
204
|
1
|
Exon 3b
|
403
|
555
|
153
|
1
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Exon 4
|
556
|
650
|
95
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1
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Exon 5
|
651
|
766
|
116
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1
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Exon 6
|
767
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1821
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1055
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1
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ID |
Class |
Location |
Mutation |
Length |
is synonymous |
Source |
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Primary source |
NCBI : CCDS45785
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Nucleotide |
SPHK1, mRNA isoform 3[NM_001142601.1] : 393...1547
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Length |
1155
|
Location |
Chromosome 17 (NC_000017.10) strand : +
74381725...74381734 | 74382065...74382217 | 74382301...74382395 | 74382473...74382588 |
74382886...74383666 |
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Start codon |
1
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Translation |
NP_001136073.1 |
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1 |
AGTGCCCTCC |
CCGCTCCGCG |
GCGCCGGCTG |
CGAAGTTGAG |
CGAAAAGTTT |
GAGGCCGGAG |
GGAGCGAGGC |
CGGGGAGTCC |
|
81 |
GCTCCAGCGG |
GGCGCTCCAG |
TCCCTCAGAC |
GTGGGCTGAG |
CTTGGGACGA |
GCTGCGTTCC |
GCCCCAGGCC |
ACTGTAGGGA |
|
161 |
ACGGCGGTGG |
CGCCTCCCCA |
GCAAACCGGA |
CCGACTGGGT |
CCAGCCGCCG |
CAGGGAATGA |
CGCCGGTGCT |
CCTGCAGCCA |
|
241 |
CGGCTCCGGG |
CGGGGAAGGC |
GAGCCCCACA |
GCCGGCCCTG |
CGACGCCCGC |
CTGGGCAGCA |
CCGATAAGGA |
GCTGAAGGCA |
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321 |
GGAGCCGCCG |
CCACGGGCAG |
CGCCCCCACA |
GCGCCAGGGA |
CCCCCTGGCA |
GCGGGAGCCG |
CGGGTCGAGG |
TTATGGATCC |
|
401 |
AGCGGGCGGC |
CCCCGGGGCG |
TGCTCCCGCG |
GCCCTGCCGC |
GTGCTGGTGC |
TGCTGAACCC |
GCGCGGCGGC |
AAGGGCAAGG |
|
481 |
CCTTGCAGCT |
CTTCCGGAGT |
CACGTGCAGC |
CCCTTTTGGC |
TGAGGCTGAA |
ATCTCCTTCA |
CGCTGATGCT |
CACTGAGCGG |
|
561 |
CGGAACCACG |
CGCGGGAGCT |
GGTGCGGTCG |
GAGGAGCTGG |
GCCGCTGGGA |
CGCTCTGGTG |
GTCATGTCTG |
GAGACGGGCT |
|
641 |
GATGCACGAG |
GTGGTGAACG |
GGCTCATGGA |
GCGGCCTGAC |
TGGGAGACCG |
CCATCCAGAA |
GCCCCTGTGT |
AGCCTCCCAG |
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721 |
CAGGCTCTGG |
CAACGCGCTG |
GCAGCTTCCT |
TGAACCATTA |
TGCTGGCTAT |
GAGCAGGTCA |
CCAATGAAGA |
CCTCCTGACC |
|
801 |
AACTGCACGC |
TATTGCTGTG |
CCGCCGGCTG |
CTGTCACCCA |
TGAACCTGCT |
GTCTCTGCAC |
ACGGCTTCGG |
GGCTGCGCCT |
|
881 |
CTTCTCTGTG |
CTCAGCCTGG |
CCTGGGGCTT |
CATTGCTGAT |
GTGGACCTAG |
AGAGTGAGAA |
GTATCGGCGT |
CTGGGGGAGA |
|
961 |
TGCGCTTCAC |
TCTGGGCACC |
TTCCTGCGTC |
TGGCAGCCCT |
GCGCACCTAC |
CGCGGCCGAC |
TGGCCTACCT |
CCCTGTAGGA |
|
1041 |
AGAGTGGGTT |
CCAAGACACC |
TGCCTCCCCC |
GTTGTGGTCC |
AGCAGGGCCC |
GGTAGATGCA |
CACCTTGTGC |
CACTGGAGGA |
|
1121 |
GCCAGTGCCC |
TCTCACTGGA |
CAGTGGTGCC |
CGACGAGGAC |
TTTGTGCTAG |
TCCTGGCACT |
GCTGCACTCG |
CACCTGGGCA |
|
1201 |
GTGAGATGTT |
TGCTGCACCC |
ATGGGCCGCT |
GTGCAGCTGG |
CGTCATGCAT |
CTGTTCTACG |
TGCGGGCGGG |
AGTGTCTCGT |
|
1281 |
GCCATGCTGC |
TGCGCCTCTT |
CCTGGCCATG |
GAGAAGGGCA |
GGCATATGGA |
GTATGAATGC |
CCCTACTTGG |
TATATGTGCC |
|
1361 |
CGTGGTCGCC |
TTCCGCTTGG |
AGCCCAAGGA |
TGGGAAAGGT |
GTGTTTGCAG |
TGGATGGGGA |
ATTGATGGTT |
AGCGAGGCCG |
|
1441 |
TGCAGGGCCA |
GGTGCACCCA |
AACTACTTCT |
GGATGGTCAG |
CGGTTGCGTG |
GAGCCCCCGC |
CCAGCTGGAA |
GCCCCAGCAG |
|
1521 |
ATGCCACCGC |
CAGAAGAGCC |
CTTATGACCC |
CTGGGCCGCG |
CTGTGCCTTA |
GTGTCTACTT |
GCAGGACCCT |
TCCTCCTTCC |
|
1601 |
CTAGGGCTGC |
AGGGCCTGTC |
CACAGCTCCT |
GTGGGGGTGG |
AGGAGACTCC |
TCTGGAGAAG |
GGTGAGAAGG |
TGGAGGCTAT |
|
1681 |
GCTTTGGGGG |
GACAGGCCAG |
AATGAAGTCC |
TGGGTCAGGA |
GCCCAGCTGG |
CTGGGCCCAG |
CTGCCTATGT |
AAGGCCTTCT |
|
1761 |
AGTTTGTTCT |
GAGACCCCCA |
CCCCACGAAC |
CAAATCCAAA |
TAAAGTGACA |
TTCCCAGCCT |
GAAAAAAAAA |
AAAAAAAAA |
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>gi|217272882|ref|NM_001142601.1|Sphingosine kinase 1 (SPHK1), transcript variant 3
AGTGCCCTCCCCGCTCCGCGGCGCCGGCTGCGAAGTTGAGCGAAAAGTTTGAGGCCGGAGGGAGCGAGGCCGGGGAGTCC
GCTCCAGCGGGGCGCTCCAGTCCCTCAGACGTGGGCTGAGCTTGGGACGAGCTGCGTTCCGCCCCAGGCCACTGTAGGGA
ACGGCGGTGGCGCCTCCCCAGCAAACCGGACCGACTGGGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGCAGCCA
CGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGGCCCTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGAAGGCA
GGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCCAGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCC
AGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGCCGCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAGG
CCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTTGGCTGAGGCTGAAATCTCCTTCACGCTGATGCTCACTGAGCGG
CGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGAGCTGGGCCGCTGGGACGCTCTGGTGGTCATGTCTGGAGACGGGCT
GATGCACGAGGTGGTGAACGGGCTCATGGAGCGGCCTGACTGGGAGACCGCCATCCAGAAGCCCCTGTGTAGCCTCCCAG
CAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAACCATTATGCTGGCTATGAGCAGGTCACCAATGAAGACCTCCTGACC
AACTGCACGCTATTGCTGTGCCGCCGGCTGCTGTCACCCATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCT
CTTCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTGCTGATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGA
TGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCAGCCCTGCGCACCTACCGCGGCCGACTGGCCTACCTCCCTGTAGGA
AGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGTGGTCCAGCAGGGCCCGGTAGATGCACACCTTGTGCCACTGGAGGA
GCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACGAGGACTTTGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCA
GTGAGATGTTTGCTGCACCCATGGGCCGCTGTGCAGCTGGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGT
GCCATGCTGCTGCGCCTCTTCCTGGCCATGGAGAAGGGCAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCC
CGTGGTCGCCTTCCGCTTGGAGCCCAAGGATGGGAAAGGTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCG
TGCAGGGCCAGGTGCACCCAAACTACTTCTGGATGGTCAGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAG
ATGCCACCGCCAGAAGAGCCCTTATGACCCCTGGGCCGCGCTGTGCCTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCC
CTAGGGCTGCAGGGCCTGTCCACAGCTCCTGTGGGGGTGGAGGAGACTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTAT
GCTTTGGGGGGACAGGCCAGAATGAAGTCCTGGGTCAGGAGCCCAGCTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCT
AGTTTGTTCTGAGACCCCCACCCCACGAACCAAATCCAAATAAAGTGACATTCCCAGCCTGAAAAAAAAAAAAAAAAAA
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Primary source |
RefSeq : NM_001142602.1 (GI:217272884)
|
Name |
Sphingosine kinase 1 (SPHK1), transcript variant 4
|
Type of transcript |
mRNA
|
Organism |
Homo sapiens
|
Length |
1884 nt
|
Map |
17q25.2
|
Location |
Chromosome 17 (NC_000017.10) strand : +
74381288...74381734 | 74382065...74382217 | 74382301...74382395 | 74382473...74382588 |
74382886...74383940 |
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Exon(s) |
Start |
End |
Length |
is coding |
Exon 2a
|
1
|
447
|
447
|
1
|
Exon 3b
|
448
|
600
|
153
|
1
|
Exon 4
|
601
|
695
|
95
|
1
|
Exon 5
|
696
|
811
|
116
|
1
|
Exon 6
|
812
|
1866
|
1055
|
1
|
|
|
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|
ID |
Class |
Location |
Mutation |
Length |
is synonymous |
Source |
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|
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|
Primary source |
NCBI : CCDS45785
|
Nucleotide |
SPHK1, mRNA isoform 4[NM_001142602.1] : 438...1592
|
Length |
1155
|
Location |
Chromosome 17 (NC_000017.10) strand : +
74381725...74381734 | 74382065...74382217 | 74382301...74382395 | 74382473...74382588 |
74382886...74383666 |
|
Start codon |
1
|
Translation |
NP_001136074.1 |
|
|
|
|
|
|
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|
|
1 |
GACTCATCCG |
TCGGGCCGGA |
ACCGAACCCC |
AAGCCCCAGG |
GAGAAAGCCC |
CGGAGCAGGC |
GCCCTTCTCA |
GGGATTGTAG |
|
81 |
GCTTAGTCAC |
ACGGCGGGGG |
CGCCCTCGGA |
GGCACCGGAC |
CTCAGCTCTC |
TGGACTTCCC |
GGGAACCTGG |
CTCCCCGCGC |
|
161 |
GTGGTCCCGG |
GATTTAGTCG |
GGCGCTCCCC |
ACCTCTGGCA |
GCTGCGGCCC |
CGGACTCCGC |
CAGCGCTGTC |
TTCTCTCCCT |
|
241 |
CAGGTCCAGC |
CGCCGCAGGG |
AATGACGCCG |
GTGCTCCTGC |
AGCCACGGCT |
CCGGGCGGGG |
AAGGCGAGCC |
CCACAGCCGG |
|
321 |
CCCTGCGACG |
CCCGCCTGGG |
CAGCACCGAT |
AAGGAGCTGA |
AGGCAGGAGC |
CGCCGCCACG |
GGCAGCGCCC |
CCACAGCGCC |
|
401 |
AGGGACCCCC |
TGGCAGCGGG |
AGCCGCGGGT |
CGAGGTTATG |
GATCCAGCGG |
GCGGCCCCCG |
GGGCGTGCTC |
CCGCGGCCCT |
|
481 |
GCCGCGTGCT |
GGTGCTGCTG |
AACCCGCGCG |
GCGGCAAGGG |
CAAGGCCTTG |
CAGCTCTTCC |
GGAGTCACGT |
GCAGCCCCTT |
|
561 |
TTGGCTGAGG |
CTGAAATCTC |
CTTCACGCTG |
ATGCTCACTG |
AGCGGCGGAA |
CCACGCGCGG |
GAGCTGGTGC |
GGTCGGAGGA |
|
641 |
GCTGGGCCGC |
TGGGACGCTC |
TGGTGGTCAT |
GTCTGGAGAC |
GGGCTGATGC |
ACGAGGTGGT |
GAACGGGCTC |
ATGGAGCGGC |
|
721 |
CTGACTGGGA |
GACCGCCATC |
CAGAAGCCCC |
TGTGTAGCCT |
CCCAGCAGGC |
TCTGGCAACG |
CGCTGGCAGC |
TTCCTTGAAC |
|
801 |
CATTATGCTG |
GCTATGAGCA |
GGTCACCAAT |
GAAGACCTCC |
TGACCAACTG |
CACGCTATTG |
CTGTGCCGCC |
GGCTGCTGTC |
|
881 |
ACCCATGAAC |
CTGCTGTCTC |
TGCACACGGC |
TTCGGGGCTG |
CGCCTCTTCT |
CTGTGCTCAG |
CCTGGCCTGG |
GGCTTCATTG |
|
961 |
CTGATGTGGA |
CCTAGAGAGT |
GAGAAGTATC |
GGCGTCTGGG |
GGAGATGCGC |
TTCACTCTGG |
GCACCTTCCT |
GCGTCTGGCA |
|
1041 |
GCCCTGCGCA |
CCTACCGCGG |
CCGACTGGCC |
TACCTCCCTG |
TAGGAAGAGT |
GGGTTCCAAG |
ACACCTGCCT |
CCCCCGTTGT |
|
1121 |
GGTCCAGCAG |
GGCCCGGTAG |
ATGCACACCT |
TGTGCCACTG |
GAGGAGCCAG |
TGCCCTCTCA |
CTGGACAGTG |
GTGCCCGACG |
|
1201 |
AGGACTTTGT |
GCTAGTCCTG |
GCACTGCTGC |
ACTCGCACCT |
GGGCAGTGAG |
ATGTTTGCTG |
CACCCATGGG |
CCGCTGTGCA |
|
1281 |
GCTGGCGTCA |
TGCATCTGTT |
CTACGTGCGG |
GCGGGAGTGT |
CTCGTGCCAT |
GCTGCTGCGC |
CTCTTCCTGG |
CCATGGAGAA |
|
1361 |
GGGCAGGCAT |
ATGGAGTATG |
AATGCCCCTA |
CTTGGTATAT |
GTGCCCGTGG |
TCGCCTTCCG |
CTTGGAGCCC |
AAGGATGGGA |
|
1441 |
AAGGTGTGTT |
TGCAGTGGAT |
GGGGAATTGA |
TGGTTAGCGA |
GGCCGTGCAG |
GGCCAGGTGC |
ACCCAAACTA |
CTTCTGGATG |
|
1521 |
GTCAGCGGTT |
GCGTGGAGCC |
CCCGCCCAGC |
TGGAAGCCCC |
AGCAGATGCC |
ACCGCCAGAA |
GAGCCCTTAT |
GACCCCTGGG |
|
1601 |
CCGCGCTGTG |
CCTTAGTGTC |
TACTTGCAGG |
ACCCTTCCTC |
CTTCCCTAGG |
GCTGCAGGGC |
CTGTCCACAG |
CTCCTGTGGG |
|
1681 |
GGTGGAGGAG |
ACTCCTCTGG |
AGAAGGGTGA |
GAAGGTGGAG |
GCTATGCTTT |
GGGGGGACAG |
GCCAGAATGA |
AGTCCTGGGT |
|
1761 |
CAGGAGCCCA |
GCTGGCTGGG |
CCCAGCTGCC |
TATGTAAGGC |
CTTCTAGTTT |
GTTCTGAGAC |
CCCCACCCCA |
CGAACCAAAT |
|
1841 |
CCAAATAAAG |
TGACATTCCC |
AGCCTGAAAA |
AAAAAAAAAA |
AAAA |
|
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|
>gi|217272884|ref|NM_001142602.1|Sphingosine kinase 1 (SPHK1), transcript variant 4
GACTCATCCGTCGGGCCGGAACCGAACCCCAAGCCCCAGGGAGAAAGCCCCGGAGCAGGCGCCCTTCTCAGGGATTGTAG
GCTTAGTCACACGGCGGGGGCGCCCTCGGAGGCACCGGACCTCAGCTCTCTGGACTTCCCGGGAACCTGGCTCCCCGCGC
GTGGTCCCGGGATTTAGTCGGGCGCTCCCCACCTCTGGCAGCTGCGGCCCCGGACTCCGCCAGCGCTGTCTTCTCTCCCT
CAGGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGCAGCCACGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGG
CCCTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGAAGGCAGGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCC
AGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCT
GCCGCGTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTT
TTGGCTGAGGCTGAAATCTCCTTCACGCTGATGCTCACTGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGA
GCTGGGCCGCTGGGACGCTCTGGTGGTCATGTCTGGAGACGGGCTGATGCACGAGGTGGTGAACGGGCTCATGGAGCGGC
CTGACTGGGAGACCGCCATCCAGAAGCCCCTGTGTAGCCTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAAC
CATTATGCTGGCTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCACGCTATTGCTGTGCCGCCGGCTGCTGTC
ACCCATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCTTCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTG
CTGATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGATGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCA
GCCCTGCGCACCTACCGCGGCCGACTGGCCTACCTCCCTGTAGGAAGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGT
GGTCCAGCAGGGCCCGGTAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACG
AGGACTTTGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATGTTTGCTGCACCCATGGGCCGCTGTGCA
GCTGGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCTGCTGCGCCTCTTCCTGGCCATGGAGAA
GGGCAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCGCCTTCCGCTTGGAGCCCAAGGATGGGA
AAGGTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTGCAGGGCCAGGTGCACCCAAACTACTTCTGGATG
GTCAGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGATGCCACCGCCAGAAGAGCCCTTATGACCCCTGGG
CCGCGCTGTGCCTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCCCTAGGGCTGCAGGGCCTGTCCACAGCTCCTGTGGG
GGTGGAGGAGACTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTATGCTTTGGGGGGACAGGCCAGAATGAAGTCCTGGGT
CAGGAGCCCAGCTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCTAGTTTGTTCTGAGACCCCCACCCCACGAACCAAAT
CCAAATAAAGTGACATTCCCAGCCTGAAAAAAAAAAAAAAAAAA
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|
|
Exon number |
1b
|
Length |
561 nt
|
Location |
Chromosome 17 (NC_000017.10) : 74380689...74381249 (+)
|
Is part of |
SPHK1, mRNA isoform 2
(NM_182965.2)
|
Sequence |
Show
|
|
AGTGCCCTCCCCGCTCCGCGGCGCCGGCTGCGAAGTTGAGCGAAAAGTTTGAGGCCGGAGGGAGCGAGGCCGGGGAGTCC
GCTCCAGCGGGGCGCTCCAGTCCCTCAGACGTGGGCTGAGCTTGGGACGAGCTGCGTTCCGCCCCAGGCCACTGTAGGGA
ACGGCGGTGGCGCCTCCCCAGCAAACCGGACCGACTGGGTAGGGCCGCCCACCCTGCCTTCGCGCCGCTCGTGGCTCCTG
TGCGGCCCGCCCTCGCGGGGCCCCGGGAACTGGGCCACTTGTCGCTTGGGCGAGAGCAGGCGGCAGCTGGTGGCCCGGTT
CGGGCTTGGCTTTGGCGCGACCCGGGAGCGGCTCCCACGAGCGCCGCGCGCGTCGCAACGGAGCGGGGCCCTGAGAAGCG
CGCGCCGCGGCTCCCACCGCTCTGGAGCTCCGGGCAGGGGACACGGCAACCTGGATGGCTGGGGCAGGGATCCTCTCCCA
GAACTTCGTGCCCAGCAATGTCCGCTCAAGTTCTGGGATTTTTACGCAGCTGGACTCCCCTCCCCCTGGCAGCCCCGAGG
G
|
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|
Exon number |
2a
|
Length |
447 nt
|
Location |
Chromosome 17 (NC_000017.10) : 74381288...74381734 (+)
|
Is part of |
SPHK1, mRNA isoform 4
(NM_001142602.1)
|
Sequence |
Show
|
|
GACTCATCCGTCGGGCCGGAACCGAACCCCAAGCCCCAGGGAGAAAGCCCCGGAGCAGGCGCCCTTCTCAGGGATTGTAG
GCTTAGTCACACGGCGGGGGCGCCCTCGGAGGCACCGGACCTCAGCTCTCTGGACTTCCCGGGAACCTGGCTCCCCGCGC
GTGGTCCCGGGATTTAGTCGGGCGCTCCCCACCTCTGGCAGCTGCGGCCCCGGACTCCGCCAGCGCTGTCTTCTCTCCCT
CAGGTCCAGCCGCCGCAGGGAATGACGCCGGTGCTCCTGCAGCCACGGCTCCGGGCGGGGAAGGCGAGCCCCACAGCCGG
CCCTGCGACGCCCGCCTGGGCAGCACCGATAAGGAGCTGAAGGCAGGAGCCGCCGCCACGGGCAGCGCCCCCACAGCGCC
AGGGACCCCCTGGCAGCGGGAGCCGCGGGTCGAGGTTATGGATCCAG
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|
Exon number |
3a
|
Length |
195 nt
|
Location |
Chromosome 17 (NC_000017.10) : 74382023...74382217 (+)
|
Is part of |
SPHK1, mRNA isoform 1
(NM_021972.3)
|
Sequence |
Show
|
|
TGGTCGGTTGCGGACGTGGCCTCTTTGGTTTTGTTTTCTCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGCCGC
GTGCTGGTGCTGCTGAACCCGCGCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTTGGC
TGAGGCTGAAATCTCCTTCACGCTGATGCTCACTG
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|
Exon number |
6
|
Length |
1055 nt
|
Location |
Chromosome 17 (NC_000017.10) : 74382886...74383940 (+)
|
Is part of |
SPHK1, mRNA isoform 1
(NM_021972.3)
SPHK1, mRNA isoform 4
(NM_001142602.1)
SPHK1, mRNA isoform 3
(NM_001142601.1)
SPHK1, mRNA isoform 2
(NM_182965.2)
|
Sequence |
Show
|
|
CTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCACGCTATTGCTGTGCCGCCGGCTGCTGTCACCCATGAACC
TGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCTTCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTGCTGATGTGGAC
CTAGAGAGTGAGAAGTATCGGCGTCTGGGGGAGATGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCAGCCCTGCGCAC
CTACCGCGGCCGACTGGCCTACCTCCCTGTAGGAAGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGTGGTCCAGCAGG
GCCCGGTAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACGAGGACTTTGTG
CTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATGTTTGCTGCACCCATGGGCCGCTGTGCAGCTGGCGTCAT
GCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCTGCTGCGCCTCTTCCTGGCCATGGAGAAGGGCAGGCATA
TGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCGCCTTCCGCTTGGAGCCCAAGGATGGGAAAGGTGTGTTT
GCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTGCAGGGCCAGGTGCACCCAAACTACTTCTGGATGGTCAGCGGTTG
CGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGATGCCACCGCCAGAAGAGCCCTTATGACCCCTGGGCCGCGCTGTGC
CTTAGTGTCTACTTGCAGGACCCTTCCTCCTTCCCTAGGGCTGCAGGGCCTGTCCACAGCTCCTGTGGGGGTGGAGGAGA
CTCCTCTGGAGAAGGGTGAGAAGGTGGAGGCTATGCTTTGGGGGGACAGGCCAGAATGAAGTCCTGGGTCAGGAGCCCAG
CTGGCTGGGCCCAGCTGCCTATGTAAGGCCTTCTAGTTTGTTCTGAGACCCCCACCCCACGAACCAAATCCAAATAAAGT
GACATTCCCAGCCTG
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Primary source |
Uniprot : Q9NYA1
|
Name |
Sphingosine kinase 1
|
Alternative name(s) |
|
Synonym(s) |
SK 1 SPK 1
|
Organism |
Homo sapiens
|
Length |
384 aa
|
Protein existence |
---
|
|
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General annotation (Comments)
|
top
|
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|
Catalytic activity
|
ATP + sphinganine = ADP + sphinganine 1- phosphate.
ATP + sphingosine = ADP + sphingosine 1- phosphate.
|
Cofactor
|
Magnesium.
|
Function
|
Catalyzes the phosphorylation of sphingosine to form sphingosine 1-phosphate (SPP), a lipid mediator with both intra- and extracellular functions. Also acts on D-erythro-sphingosine and to a lesser extent sphinganine, but not other lipids, such as D,L-threo-dihydrosphingosine, N,N-dimethylsphingosine, diacylglycerol, ceramide, or phosphatidylinositol.
|
Similarity
|
Contains 1 DAGKc domain.
|
Subunit
|
Interacts with ACY1 (By similarity). Binds to calmodulin. Interacts with SPHKAP.
|
Tissue specificity
|
Widely expressed with highest levels in adult liver, kidney, heart and skeletal muscle.
|
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Biological process
|
sphingosine metabolic process [GO:0006670]
anti-apoptosis [GO:0006916]
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway [GO:0007205]
calcium-mediated signaling [GO:0019722]
positive regulation of cell growth [GO:0030307]
positive regulation of cell migration [GO:0030335]
positive regulation of angiogenesis [GO:0045766]
positive regulation of mitotic cell cycle [GO:0045931]
positive regulation of smooth muscle contraction [GO:0045987]
sphingoid catabolic process [GO:0046521]
positive regulation of fibroblast proliferation [GO:0048146]
|
Cellular component
|
membrane fraction [GO:0005624]
soluble fraction [GO:0005625]
cytosol [GO:0005829]
|
Molecular function
|
magnesium ion binding [GO:0000287]
DNA binding [GO:0003677]
diacylglycerol kinase activity [GO:0004143]
calmodulin binding [GO:0005516]
ATP binding [GO:0005524]
sphinganine kinase activity [GO:0008481]
D-erythro-sphingosine kinase activity [GO:0017050]
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Alternative product(s)
|
top
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  |
Uniprot Identifier
|
Difference(s) with the 'canonical' sequence
|
Notes
|
Sequences
|
Isoform 1
|
Q9NYA1-1
|
---
|
'Canonical' sequence
|
Get Fasta
|
Isoform 2
|
Q9NYA1-2
|
1-1 : M -> MSAQVLGFLRSWTPLPLAAPRGPAAAGNDAGAPTAT APGGEGEPHSRPCDARLGSTDKELKAGAAATGSAPTAPGTP WQREPRVEVM
|
---
|
Get Fasta
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Feature key |
Position
|
Length
|
Description
|
Feature identifier
|
Region |
|
|
|
|
Domain
|
12 - 159
|
148
|
DAGKc
|
Q9NYA1-DOMAIN-12
|
Natural variations |
|
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|
|
Alternative sequence
|
1 - 1
|
1
|
M -> MSAQVLGFLRSWTPLPLAAPRGPAAAGNDAGAPTAT APGGEGEPHSRPCDARLGSTDKELKAGAAATGSAPTAPGTP WQREPRVEVM
|
VSP_035453
|
Amino acid modifications |
|
|
|
|
Modified residue
|
193 - 193
|
1
|
Phosphothreonine
|
Q9NYA1-MOD_RES-193
|
Modified residue
|
225 - 225
|
1
|
Phosphoserine (By similarity)
|
Q9NYA1-MOD_RES-225
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1 |
MDPAGGPRGV |
LPRPCRVLVL |
LNPRGGKGKA |
LQLFRSHVQP |
LLAEAEISFT |
LMLTERRNHA |
RELVRSEELG |
RWDALVVMSG |
|
81 |
DGLMHEVVNG |
LMERPDWETA |
IQKPLCSLPA |
GSGNALAASL |
NHYAGYEQVT |
NEDLLTNCTL |
LLCRRLLSPM |
NLLSLHTASG |
|
161 |
LRLFSVLSLA |
WGFIADVDLE |
SEKYRRLGEM |
RFTLGTFLRL |
AALRTYRGRL |
AYLPVGRVGS |
KTPASPVVVQ |
QGPVDAHLVP |
|
241 |
LEEPVPSHWT |
VVPDEDFVLV |
LALLHSHLGS |
EMFAAPMGRC |
AAGVMHLFYV |
RAGVSRAMLL |
RLFLAMEKGR |
HMEYECPYLV |
|
321 |
YVPVVAFRLE |
PKDGKGVFAV |
DGELMVSEAV |
QGQVHPNYFW |
MVSGCVEPPP |
SWKPQQMPPP |
EEPL |
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>sp|Q9NYA1|SPHK1_human Sphingosine kinase 1
MDPAGGPRGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVMSG
DGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLSPMNLLSLHTASG
LRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLPVGRVGSKTPASPVVVQQGPVDAHLVP
LEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLV
YVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSGCVEPPPSWKPQQMPPPEEPL
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Primary source |
Uniprot : Q96GK1
|
Name |
Sphingosine kinase 1 [submitted name]
|
Alternative name(s) |
Sphingosine kinase 1, isoform CRA_c [submitted name]
|
Synonym(s) |
|
Organism |
Homo sapiens
|
Length |
398 aa
|
Protein existence |
---
|
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|
General annotation (Comments)
|
top
|
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Biological process
|
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway [GO:0007205]
|
Molecular function
|
magnesium ion binding [GO:0000287]
diacylglycerol kinase activity [GO:0004143]
D-erythro-sphingosine kinase activity [GO:0017050]
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With
|
Uniprot accession
|
IntAct
|
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Alternative product(s)
|
top
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Feature key |
Position
|
Length
|
Description
|
Feature identifier
|
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|
1 |
MDPVVGCGRG |
LFGFVFSAGG |
PRGVLPRPCR |
VLVLLNPRGG |
KGKALQLFRS |
HVQPLLAEAE |
ISFTLMLTER |
RNHARELVRS |
|
81 |
EELGRWDALV |
VMSGDGLMHE |
VVNGLMERPD |
WETAIQKPLC |
SLPAGSGNAL |
AASLNHYAGY |
EQVTNEDLLT |
NCTLLLCRRL |
|
161 |
LSPMNLLSLH |
TASGLRLFSV |
LSLAWGFIAD |
VDLESEKYRR |
LGEMRFTLGT |
FLRLAALRTY |
RGRLAYLPVG |
RVGSKTPASP |
|
241 |
VVVQQGPVDA |
HLVPLEEPVP |
SHWTVVPDED |
FVLVLALLHS |
HLGSEMFAAP |
MGRCAAGVMH |
LFYVRAGVSR |
AMLLRLFLAM |
|
321 |
EKGRHMEYEC |
PYLVYVPVVA |
FRLEPKDGKG |
VFAVDGELMV |
SEAVQGQVHP |
NYFWMVSGCV |
EPPPSWKPQQ |
MPPPEEPL |
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>sp|Q96GK1|Q96GK1_human Sphingosine kinase 1 [submitted name]
MDPVVGCGRGLFGFVFSAGGPRGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRS
EELGRWDALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRL
LSPMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLPVGRVGSKTPASP
VVVQQGPVDAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAM
EKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSGCVEPPPSWKPQQMPPPEEPL
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Primary source |
Uniprot : Q53ZR5
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Name |
Sphingosine kinase 1 [submitted name]
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Alternative name(s) |
Sphingosine kinase 1, isoform CRA_a [submitted name] cDNA FLJ78254 [submitted name]
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Synonym(s) |
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Organism |
Homo sapiens
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Length |
384 aa
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Protein existence |
---
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General annotation (Comments)
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Biological process
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activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway [GO:0007205]
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Molecular function
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diacylglycerol kinase activity [GO:0004143]
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With
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Uniprot accession
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IntAct
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Alternative product(s)
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Feature key |
Position
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Length
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Description
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Feature identifier
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1 |
MDPAGGPRGV |
LPRPCRVLVL |
LNPRGGKGKA |
LQLFRSHVQP |
LLAEAEISFT |
LMLTERRNHA |
RELVRSEELG |
RWDALVVMSG |
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81 |
DGLMHEVVNG |
LMERPDWETA |
IQKPLCSLPA |
GSGNALAASL |
NHYAGYEQVT |
NEDLLTNCTL |
LLCRRLLSPM |
NLLSLHTASG |
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161 |
LRLFSVLSLA |
WGFIADVDLE |
SEKYRRLGEM |
RFTLGTFLRL |
AALRTYRGRL |
AYLPVGRVGS |
KTPASPVVVQ |
QGPVDAHLVP |
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241 |
LEEPVPSHWT |
VVPDEDFVLV |
LALLHSHLGS |
EMFAAPMGRC |
AAGVMHLFYV |
RAGVSRAMLL |
RLFLAMEKGR |
HMEYECPYLV |
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321 |
YVPVVAFRLE |
PKDGKGVFAV |
DGELMVSEAV |
QGQVHPNYFW |
MVSGCVEPPP |
SWKPQQMPPP |
EEPL |
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>sp|Q53ZR5|Q53ZR5_human Sphingosine kinase 1 [submitted name]
MDPAGGPRGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVMSG
DGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLSPMNLLSLHTASG
LRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLPVGRVGSKTPASPVVVQQGPVDAHLVP
LEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLV
YVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSGCVEPPPSWKPQQMPPPEEPL
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