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SNHG1

small nucleolar RNA host gene 1
General Information
Name small nucleolar RNA host gene 1
Alias
  • U22 snoRNA host
  • long intergenic non-protein coding RNA 57
  • small nucleolar RNA host gene 1 (non-protein coding)
Gene_family Small nucleolar RNA non-coding host genes
organism Homo sapiens
entrez_id 23642
location 11q12.3
transcript_count 12
exon_count 11
Cross References
Location
by NCBI GRCh38.p14
Summary
    Entrez This locus represents a small nucleolar RNA host gene that produces multiple alternatively spliced long non-coding RNAs. This gene is upregulated in cancers and is thought to act as promoter of cell proliferation. This transcript negatively regulates tumor suppressor genes such as tumor protein p53. Expression of this locus may be a marker of tumor progression. [provided by RefSeq, Dec 2017]
Interactions
NCBI
A A.Source B B.DB B.Source Description PubMed
SNHG1 BioGRID DNMT3B GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID DNMT1 GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID RIGI GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID TRIM25 GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID NXF1 GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID MOV10 GeneID BioGRID Affinity Capture-RNA
SNHG1 BioGRID XRN1 GeneID BioGRID Two-hybrid
StringDB
A B experiments database textmining combined score hadb nhadb
Ontologies
ID Category Term Effect Evidence PubMed
GO:0006396 Biological Process RNA processing involved_in IEA
GO:0005730 Cellular Component nucleolus located_in IEA
Pathways
Name DB ID
Transcripts
Accession Version MolecularType Name NCBI Comments
NR_152578 1 ncRNA transcript variant 5 NC_000011 Reference
NR_152582 1 ncRNA transcript variant 9 NC_000011 Reference
NR_152580 1 ncRNA transcript variant 7 NC_000011 Reference
NR_152579 1 ncRNA transcript variant 6 NC_000011 Reference
NR_152583 1 ncRNA transcript variant 10 NC_000011 Reference
NR_152577 1 ncRNA transcript variant 4 NC_000011 Reference
NR_152581 1 ncRNA transcript variant 8 NC_000011 Reference
NR_003098 2 ncRNA transcript variant 1 NC_000011 Reference
NR_152576 1 ncRNA transcript variant 3 NC_000011 Reference
NR_152585 1 ncRNA transcript variant 12 NC_000011 Reference
NR_152584 1 ncRNA transcript variant 11 NC_000011 Reference
NR_152575 1 ncRNA transcript variant 2 NC_000011 Reference